Scaffold Ga0209234_1001339

Overview

Basic Information

• Taxon OID: 3300026295
• Scaffold ID: Ga0209234_1001339
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9206
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005577	Metagenome / Metatranscriptome	396	Y
F036450	Metagenome / Metatranscriptome	170	Y
F058850	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209234_10013392	F058850	GGAGG	VTEVGRDSERMQDYIVGRLSDDEHRAFEDRLVRDPGLVRELEQSLRLSEGLHQLRAQGYFDKAVSRARGSRVWLPVLLAAAAIAGLAFFLWLQPSTGLSPVLTASLESRTPGVAPPVAAHFTFVAMRDSSIPDLDLPAGGVIEFRAAPATHLTASRYRMTLVRQDEGGSATPVGAAAGLQLSADGYVRGYADAARLEPGSYLLRIEPDAEAPGTAELFPFNLRARGARPTL
Ga0209234_10013394	F036450	AGGAGG	METRRLRTIQQPSHIERLLDALVSRANLLPKDGYQIRDSAALPPQLQTLITKATQEGRVWGCWANNFETCLFTCEMSLPRSRERGSPVLLVNRYGESGELQDAGSWMSDPEGKWQRCAD
Ga0209234_10013396	F005577	GAG	MSRVNIAVAVAEDARGRIHEIADACRALGLHHSATLALVGVLTGSMESDDLVKLWAVPGVLAIEVEYGFRWGTTGRTH