Scaffold Ga0209839_10044589

Overview

Basic Information

• Taxon OID: 3300026294
• Scaffold ID: Ga0209839_10044589
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1626
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 68.6135
  • Long. (^o): -149.3144
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000530	Metagenome / Metatranscriptome	1047	Y
F046541	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209839_100445892	F000530	N/A	MTEQLNSTERALSANENKPVDRPFRVKLRGSVLTLVRLPNRRSVRAAFHQLSTSGGMIHLEKPLDEKVEVELIFHIGETTIRGKAQMLFPMWATQGWLQPFRFVDLSDANREILDANLKSFLGDATKATSAGA
Ga0209839_100445893	F046541	GGAG	MISDLPGGGSVTARVANCLPLGNDGKYFLIGASLYTHGNVWKIADAPGDWNTLAQAAAVSGTGAGISDADSAPVLTVNKKAWPYNLFSEGAEVHPGRK