Scaffold Ga0208277_1029879

Overview

Basic Information

• Taxon OID: 3300026292
• Scaffold ID: Ga0208277_1029879
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2476
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F008648	Metagenome	330	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208277_10298792	F002715	AGGA	MAEEELQSVKLEVGLLKNEVEVRAKQIETLLQKLDLTTDKLQQLTVHIIQLNTRQEEYLRNSTSMSQEFKILHTRIGDLHDKNLVMQKEIEERIDRLDQYKSKLMGMIIVVGGFVGTLVAAATGIFLKD
Ga0208277_10298793	F000245	AGGA	MKTFSRLKEGRLDDKMDKAVSDEIKKRKLARFPVNATDDYNMKTKKNFAFKFPTPSGEMMFHVYLRPMAPSKNQPKGIMAFNYDIEDK
Ga0208277_10298794	F008648	GAG	MRSFIQHLNERIVKSSLSDMLFMPKITEYNRMMIPISSSMYKRIWPDNIRATVFHTTDVEGVKKIAKLQGKKTQISAFFAMQSRYMEIGVATQGGVHAVLEMDADILLSAKGDIMSHVDKGGRRWTTIADLEETSRYTNFGKVNRDIEKMFS