Basic Information | |
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Taxon OID | 3300026292 Open in IMG/M |
Scaffold ID | Ga0208277_1000001 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 221643 |
Total Scaffold Genes | 292 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 217 (74.32%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004144 | Metagenome / Metatranscriptome | 451 | Y |
F005433 | Metagenome / Metatranscriptome | 401 | Y |
F022758 | Metagenome / Metatranscriptome | 213 | Y |
F042029 | Metagenome / Metatranscriptome | 159 | Y |
F051480 | Metagenome / Metatranscriptome | 144 | Y |
F055215 | Metagenome / Metatranscriptome | 139 | N |
F065138 | Metagenome / Metatranscriptome | 128 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208277_1000001133 | F065138 | GAGG | VRYAELFELNSEVDSKVIDLLSILSSEGVDNIPLETLVNELKAMGVDADVESLFDEISNLPIVNNIKDGMVYFNTSSLDASNLNKVDPEKADKTVTNMAKKQVKKELNK |
Ga0208277_1000001168 | F042029 | AGGA | MNTLYLVCSHSCLSQMEVPYLLNNSPNLHGTSQAGEHWASYELDGKAIDHEPGILGKIRVHDDYWNIEGGDSQYYNHTVRNTMEITVPQLDGLLNLINNKSIAVLLHAQNYHEIWKWSRNLPVIMIRTAIDEWDGNVVHWAAREYNTLMLDSKNNNNSTDSHAWPGVKEVVDKFQSKKSYNNLIDDCEGDIILKQSQWTTLEGLDTLWKTVGIDAPDQNWINQYYEDFQNHQEIDKTVATELTNEYNRRS |
Ga0208277_1000001254 | F055215 | N/A | MKIKDVLQLPAINIGDEVYVGRFKNRKATVTGFGVDNHNQPILKTNKGEHKLFKPRIAKLMKEE |
Ga0208277_100000142 | F051480 | N/A | MENWCGLGYCKFFRGLIASRQPEEIIKIVERYNKDHDKTESNYIDIVIRSEGSFSYQDIMTMPVNSIKLLVDRMNNRIEELNKQTKQASGRR |
Ga0208277_100000167 | F022758 | AGGAG | MSTLPATGSNISMSTVRNYFGLSGTVSMSTLGSTISPSVTSNIKLSATFGGWQYPSPSGSHP |
Ga0208277_100000168 | F005433 | AGGAG | MIRTRYEIETFVLGAHPSPARKAQVLTEELMKARETKHPDLPILEAIYKDFSAEHNVEELSKDIESTEEEYWVHRLAKLAAIDILTIGKVQPEHMAYMVALPDEAFKASVKEATSIAKQLNYEVQQIEAELQADLASAK |
Ga0208277_100000171 | F004144 | GAG | MIQWLKKSIHHLKVETGWGYFYHLWHSLCNSWALIVIAFKSVVHGLFPWIWKADAPKGVIRMYHQIMRIEHIEKMDKLRKLPKDERYKSNKPIDPIE |
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