NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208277_1000001

Scaffold Ga0208277_1000001


Overview

Basic Information
Taxon OID3300026292 Open in IMG/M
Scaffold IDGa0208277_1000001 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)221643
Total Scaffold Genes292 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)217 (74.32%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004144Metagenome / Metatranscriptome451Y
F005433Metagenome / Metatranscriptome401Y
F022758Metagenome / Metatranscriptome213Y
F042029Metagenome / Metatranscriptome159Y
F051480Metagenome / Metatranscriptome144Y
F055215Metagenome / Metatranscriptome139N
F065138Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0208277_1000001133F065138GAGGVRYAELFELNSEVDSKVIDLLSILSSEGVDNIPLETLVNELKAMGVDADVESLFDEISNLPIVNNIKDGMVYFNTSSLDASNLNKVDPEKADKTVTNMAKKQVKKELNK
Ga0208277_1000001168F042029AGGAMNTLYLVCSHSCLSQMEVPYLLNNSPNLHGTSQAGEHWASYELDGKAIDHEPGILGKIRVHDDYWNIEGGDSQYYNHTVRNTMEITVPQLDGLLNLINNKSIAVLLHAQNYHEIWKWSRNLPVIMIRTAIDEWDGNVVHWAAREYNTLMLDSKNNNNSTDSHAWPGVKEVVDKFQSKKSYNNLIDDCEGDIILKQSQWTTLEGLDTLWKTVGIDAPDQNWINQYYEDFQNHQEIDKTVATELTNEYNRRS
Ga0208277_1000001254F055215N/AMKIKDVLQLPAINIGDEVYVGRFKNRKATVTGFGVDNHNQPILKTNKGEHKLFKPRIAKLMKEE
Ga0208277_100000142F051480N/AMENWCGLGYCKFFRGLIASRQPEEIIKIVERYNKDHDKTESNYIDIVIRSEGSFSYQDIMTMPVNSIKLLVDRMNNRIEELNKQTKQASGRR
Ga0208277_100000167F022758AGGAGMSTLPATGSNISMSTVRNYFGLSGTVSMSTLGSTISPSVTSNIKLSATFGGWQYPSPSGSHP
Ga0208277_100000168F005433AGGAGMIRTRYEIETFVLGAHPSPARKAQVLTEELMKARETKHPDLPILEAIYKDFSAEHNVEELSKDIESTEEEYWVHRLAKLAAIDILTIGKVQPEHMAYMVALPDEAFKASVKEATSIAKQLNYEVQQIEAELQADLASAK
Ga0208277_100000171F004144GAGMIQWLKKSIHHLKVETGWGYFYHLWHSLCNSWALIVIAFKSVVHGLFPWIWKADAPKGVIRMYHQIMRIEHIEKMDKLRKLPKDERYKSNKPIDPIE

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