Scaffold Ga0209890_10000361

Overview

Basic Information

• Taxon OID: 3300026291
• Scaffold ID: Ga0209890_10000361
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21011
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 68.6135
  • Long. (^o): -149.3144
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000386	Metagenome / Metatranscriptome	1203	Y
F011235	Metagenome / Metatranscriptome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209890_1000036112	F000386	GGAG	MAAMTDTAPYMNLHVPPDEMVKYIQDLMTLPHGEIAASSAMTLAQRHWGGDTPLARAALLRWGALNLAFQDKRLETWTVTRDRDRIQVPAALVAAAGIAPLVIDNERAVFDIPALLDATLEFQPPAGQA
Ga0209890_100003614	F011235	GGA	MGEKHETVLAVHGNADGYWYIGAGKSIAEGPYRDPDQLLTVASDLLAAEPHWRIDVFDVAGNKIISYSSEELNADDLHPLRRQHRWNALARLTSH