Scaffold Ga0209460_1000285

Overview

Basic Information

• Taxon OID: 3300026286
• Scaffold ID: Ga0209460_1000285
• Source Dataset Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/13/2013_ DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57518
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (77.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Source Dataset Sampling Location

• Location Name: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.076217
  • Long. (^o): -89.411742

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007648	Metagenome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209460_100028513	F007648	AGGA	MAVEITPEQEIWVTTREGAAATGYNSQYLEKLANKNSRLPEAERLIKIRKRSGLFYELWLPDLLRYIDEIGYGPHQK
Ga0209460_100028522	F007648	AGG	MARETTPDQEIWVFTSEGAALTQYSREYLEKLAYKNWRLPENERVIQTRKRAGRYELWLPDLLRYKDEIGNGPLNIPKK
Ga0209460_100028523	F007648	N/A	MTAEAAQITGYNRQYIEKLSKKNWLLPEDERLFKLRRRSGHYYEIWLPDLLRYIDETGYGPHKNK
Ga0209460_100028524	F007648	N/A	MTKEAAEITGYNHEYMEILGKKNFRLPENERLIKIRKRSGRFYELWLPDLLRYIDEIGYGPHKNK
Ga0209460_100028534	F007648	N/A	MTTEGANITGYNSRYLQQLAKKNAQLPDNERFIKVRMRSNRHELWLPDLLHYIDEIGYGPHQNKK