Scaffold Ga0207993_1105750

Overview

Basic Information

• Taxon OID: 3300026270
• Scaffold ID: Ga0207993_1105750
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 756
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207993_11057501	F005813	N/A	GVWAGTQADARKYCGKDYTTVDVPTDKPNLLGFLNLNQVGSLASSPALEEVRTGEPDKKAMSWFRWAYDCMMRGQYDDAKEMLKKGLTDDRSTTSDSSHTS
Ga0207993_11057502	F006217	AGAAGG	MIEVLLAIAATQADDNAITKYCMSKFEHWTDRASCAQQLRHIERKQEVEALRKFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKKGRC
Ga0207993_11057503	F029123	AGGA	MSYEVWFGKDGNWFGYHSFKHRMEAVACEEKYLKIFRDLTIEIRRRVHAS