Scaffold Ga0208410_1008646

Overview

Basic Information

• Taxon OID: 3300026266
• Scaffold ID: Ga0208410_1008646
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3786
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045998	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208410_10086464	F045998	N/A	RRKKFQIEKRKCRGTLTALFFLSNSWTEGRGLPDEDETARRTQTRDRQTNKRTRTMGKINFETEVESVLSKQSATCDKLKIRVSDTVEGVSLSAKFVIPVNTSLSSKGADLSLGTSKVDLEAAKDFWKIKLDDVDQNTKSVTDVLKISVREKVDAIDSTATVEWKAKGNAVKAVLEPPVYEGVKSKLEFDNSKKQLTASASKKINKMDVAVKADGNVKTQQFKDAKMTISYPLPEGVKGSLEASTNGSGKITLKRGNVSAKMPLKNFTSAPDFGDVKLEFNYSTDIASF