Scaffold Ga0207990_1016474

Overview

Basic Information

• Taxon OID: 3300026262
• Scaffold ID: Ga0207990_1016474
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2400
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004881	Metagenome / Metatranscriptome	420	Y
F008085	Metagenome / Metatranscriptome	339	Y
F022672	Metagenome	213	Y
F033079	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207990_10164742	F004881	N/A	MRKNSKMNKPYKECSNPNDPEDKSLCIMVQDDSPFDGAVVRYTTFKLVEQELTGEDIACQYEYEFEVAPHDLGHEISDEDGQAFEQRLGEWVIEIIQTQMDKHAAADRDNNTKKSTT
Ga0207990_10164744	F033079	GAG	MKEIAGNRLVWRHIQRENQKMILDPLGYDAIKDIDEIQSRNRRKSDDPYIKATSEKIAHHFPKIDDAERR
Ga0207990_10164746	F022672	N/A	MTTKKYEAWLIEELQSLLDDHIFHRDRVAETYTERVDLNKEIQLIKSEINRREKGE
Ga0207990_10164747	F008085	AGGGGG	MAGSIMVRYARKTYKQQRAEERNSAVFKNLTHSVDIIPESMSIMTFSTQKEAGKFAETMRDKGYHILEIKDDYKKV