Scaffold Ga0207990_1005268

Overview

Basic Information

• Taxon OID: 3300026262
• Scaffold ID: Ga0207990_1005268
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5044
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F032813	Metagenome	179	N
F040683	Metagenome	161	Y
F061266	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207990_100526813	F032813	AGGAGG	MKTNEEGHVWLEKSQAYICPSYLNKTCTDFSDADAEWLYNLYQKHFPNAKVNGIKSQIKDEIFNLIGKDNYKKKNLIKALRNKFPDIKSGVICRILKKYLSLRVLEIDRTYKTKPFVIKGKYCIN
Ga0207990_10052683	F013700	AGG	MNIDYKNLTYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGDMVRGEFLRRIAQIGYDELKFNDIADTLENDVDENNSHLVSKYYEPPETNEEDDEV
Ga0207990_10052686	F040683	GGAG	MKKYRVWGYETQGYYIDLDANNKQDAHDKAMDIDRDDWIEGNDGESTCFDINKKNIERID
Ga0207990_10052689	F061266	AGGAGG	MFGTKKEEEQKLKRFMVMCKGKRSSTFYHEKSFFTLADADAYANLVRRQEDEQGNNFYLFEQSKHYGNGEDKK