NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207990_1003323

Scaffold Ga0207990_1003323


Overview

Basic Information
Taxon OID3300026262 Open in IMG/M
Scaffold IDGa0207990_1003323 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6848
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044590Metagenome154Y
F087429Metagenome110Y
F097511Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0207990_10033231F087429N/AMTTYKKSHKRKLSSLVKQQVPEYVLTDHPKFLEFLKAY
Ga0207990_100332311F097511GGAGMSKILVNINKQISLLNNNEINSVIQMIKNRRTELSMVAGSKLSVGQKVQFNGRYGMTIKGRLTKINQKTAIVSESNSPKQWKVSISLLEAA
Ga0207990_100332313F044590N/AMIIKINDKIEIRPVGGGILRDGIITHISISTNAQIDPAGENGAKVEELDLDLKYAGSICYTDVTFNDEGDETGDYKWAYFDQIVQPEGKNKKQWWEDNILYGKDGPLNV

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