Scaffold Ga0207990_1003323

Overview

Basic Information

• Taxon OID: 3300026262
• Scaffold ID: Ga0207990_1003323
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6848
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044590	Metagenome	154	Y
F087429	Metagenome	110	Y
F097511	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207990_10033231	F087429	N/A	MTTYKKSHKRKLSSLVKQQVPEYVLTDHPKFLEFLKAY
Ga0207990_100332311	F097511	GGAG	MSKILVNINKQISLLNNNEINSVIQMIKNRRTELSMVAGSKLSVGQKVQFNGRYGMTIKGRLTKINQKTAIVSESNSPKQWKVSISLLEAA
Ga0207990_100332313	F044590	N/A	MIIKINDKIEIRPVGGGILRDGIITHISISTNAQIDPAGENGAKVEELDLDLKYAGSICYTDVTFNDEGDETGDYKWAYFDQIVQPEGKNKKQWWEDNILYGKDGPLNV