Scaffold Ga0208408_1029619

Overview

Basic Information

• Taxon OID: 3300026260
• Scaffold ID: Ga0208408_1029619
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1968
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076483	Metagenome	118	Y
F084713	Metagenome	112	Y
F099435	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208408_10296191	F099435	N/A	MIKNETLKEIEKCEPKRQDALMNVVKNCSSYKVSHTTENEHWLCGSIIVTHWNHDTGYSRKYMGLAYPDNFESWTFHNDELAGEAFETHHEMENV
Ga0208408_10296193	F076483	GGAG	MQMISKNTLSQIFKEHNIEVDRISKIRTLQTLLNDTTLDIPLMRRAVTTINCHWILRNVLVNNAEHVNVKRIIKLIKEVI
Ga0208408_10296196	F084713	N/A	MPKLIIEKIHDKKTYGKDMYKVVKLIDSHRLSLLNTTFDEPSMLRYIQALPNTYKYEIKNKTGV