Scaffold Ga0208407_1014666

Overview

Basic Information

• Taxon OID: 3300026257
• Scaffold ID: Ga0208407_1014666
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2877
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F003357	Metagenome / Metatranscriptome	492	N
F023710	Metagenome / Metatranscriptome	209	Y
F032033	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208407_101466610	F003357	AGGAGG	MTRNSWIVKQVYTDAKENLGWLFKIILLAGGFIAGIKLLMFFNVPKEILFPVMWIAFILVAIYKWYSMKYDWKKDDKAYDRASKRYMKKLKGDK
Ga0208407_101466611	F023710	N/A	MLKKVEKEIQLFVEGIGGIDRLEFTHGTLYLKLENDKECDFYHKEIRKFYKENINPEGGCNMYSVGDEFAFDFVPEDREAPVFIRDDEEAELEAQAEIQMDLDNDAKEGR
Ga0208407_10146662	F000379	GGAG	MQKIDYTNKHGIMVGYIDRSDNVVAVETSWKSSYSAMAQILLNKYPTKEDAIKAVDSPALVPSFRKEDYQYVDGFGDVIESNLSWHKDNMRKNVGHLFLFMKGTWQYSDNGIDWEPAKEIIE
Ga0208407_10146668	F032033	AGGAG	MENIWEKDYGPFRVFGYVDHEDIDVSELFDEEAGYHIDRMREDINQGKKVWAIATAKVYCKGVELGSANIGGLLFDDYEELKKEVFEIDNHDIVHEALKEARASLNYLKDVKAPPREQLTSQFMEGQIW