Scaffold Ga0208879_1048807

Overview

Basic Information

• Taxon OID: 3300026253
• Scaffold ID: Ga0208879_1048807
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2051
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F090512	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208879_10488073	F090512	GAG	MKIRYIIGISYLSYVGMMSGSVIIEAIFIGFVLGMYDFFLMIE
Ga0208879_10488075	F002348	GGAGG	MIDYSMKSKDKIFMYGGWLLSLLAIVAGASFLWPHIHIDVLGIALIYIGIRIFNFSTFEEYKEKRMDLILKFLK