Scaffold Ga0207988_1004388

Overview

Basic Information

• Taxon OID: 3300026206
• Scaffold ID: Ga0207988_1004388
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5295
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011291	Metagenome / Metatranscriptome	292	Y
F034595	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207988_100438811	F011291	N/A	MKIMDKYEINVWKDAELLSKEIVEFESNEKCYDYVMDKHYAPGTWTGSHQNKNGVTLNRPPLGIRITWAKRTKDNYIYKPKKLTAEEKKLQRGLYDSITLETIKELGPNEMYAKVRKNYGPNPNETGYNEFPGKGRKTYIDGITGEKYTPRDA
Ga0207988_10043882	F034595	GGAG	MNISERLDNMSKEQLINLVKEIKITCESNRRKMGSGNKVFNFILRMIKGEI