Scaffold Ga0207985_1023823

Overview

Basic Information

• Taxon OID: 3300026203
• Scaffold ID: Ga0207985_1023823
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1603
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004869	Metagenome / Metatranscriptome	420	Y
F013094	Metagenome / Metatranscriptome	274	Y
F042934	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207985_10238232	F004869	GGAG	MTCDREHYYAVQSFLNDKELTEVWDIVEKAMNRQGYDVSNSELSLRLYDDELEEDIEYDMEEYLSSQSEGKDYGSKVDALVDSMGVTDKEVSTTHRRKDMDLL
Ga0207985_10238234	F042934	N/A	MKSTLNDKDYVTFTRRFVKETVDTMGIEELKDFVVNALHEDFQEVYDDLGQRGAFDDMLGWDEDTFLTVAEDFQLELEGVE
Ga0207985_10238235	F013094	AGGAG	MITAFFTGVIVAIPTSLVTMKLLNSSLFINNQELSHINEKISILINQLDDYREERLAEKLGIDVDEIK