Scaffold Ga0207984_1019853

Overview

Basic Information

• Taxon OID: 3300026202
• Scaffold ID: Ga0207984_1019853
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF43B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2039
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021104	Metagenome	220	N
F103068	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207984_10198532	F103068	AGGAG	MTEWERHERRKQKTEHMLSLENEVRVLSKRVRPNATGRIIITIGVLNERVKELKLEMIRDGDRKRLTEKIWAAVGDDQLRKDDPDNHVKKHDQSYWRHD
Ga0207984_10198538	F021104	N/A	NMQKNYPHDFEDACEVDDKIRGGLKNTTAELFLHKSAKPLREINFLEPKKQKDLFGETFDEEFKDECEGLCGV