NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208275_1047558

Scaffold Ga0208275_1047558


Overview

Basic Information
Taxon OID3300026182 Open in IMG/M
Scaffold IDGa0208275_1047558 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)862
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000942Metagenome / Metatranscriptome826Y
F013699Metagenome / Metatranscriptome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0208275_10475582F013699GGAVVPTKHIKMGSIKNMSTYKGGYRTEVARYERAPYERIEYEEYLRTHDLIDLKGRVDRGEPNPIDPTYGGIGYQYFYPDTVDLGRVKVTLESDEWKFRWEGRR
Ga0208275_10475583F000942GAGMSNPFELRFKLLEMAQGYLQEQSQRNQDYVTSAWEFAQEQGDANMKLWNELQPDSYSIEDIKKKAAELYEFVEKK

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