Scaffold Ga0209951_1000099

Overview

Basic Information

• Taxon OID: 3300026138
• Scaffold ID: Ga0209951_1000099
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19692
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4971
  • Long. (^o): -122.129
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011588	Metagenome / Metatranscriptome	289	Y
F019481	Metagenome / Metatranscriptome	229	Y
F047705	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209951_10000993	F047705	GGAGG	MSLSAKVTAAVNKAFTAAGDLVKTGTLVSKTVSDFDFATGSVVSSNSTSTVDVILQTTKRSSGEGFTVTAIMKSGVDLSVYDSLEIDGKTYSIVDHSDNGFTIDAILKKEV
Ga0209951_10000994	F019481	AGGAGG	MYNNVLDDVNSVFASSSWTSNNIKAYPDNYQGDKSNETEYCIVMVLPSNSNYNAHGGDKTIEGLVAVKIFVKAGEGQSRLMAISDILDTVLQSKKLTNGTELGTSYLNVEGLDPSNSALYSARYIIPFKIFGE
Ga0209951_10000996	F011588	N/A	MRTTFRHMRRSVDISIRKSFDRFQDFDEGSKEGKECLETLSVLHTVRKMLDDFQAHNPELFIEKDRIG