Scaffold Ga0208763_1002206

Overview

Basic Information

• Taxon OID: 3300026136
• Scaffold ID: Ga0208763_1002206
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3353
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F002137	Metagenome / Metatranscriptome	590	Y
F013776	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208763_100220611	F013776	AGGAG	MKEFCFTVTKTGYVNVEADSFEDAEAKLQENFGHLYVITDTGEELSDGWEVTNEVEVLS
Ga0208763_10022066	F001026	N/A	MKHTIELDDLELTALVTHLEGQSEMMVESRLNCSNPSETPDREEVLLNLVYAKAFTLAWDADKNPKSDFNLIENHDKIYCYK
Ga0208763_10022069	F002137	N/A	MKVSALREALSYYHDDDNITFYFLKNDTLTNCQVEDISFYTDSMGVEFTIQDTSEIMEKV