Scaffold Ga0208763_1001725

Overview

Basic Information

• Taxon OID: 3300026136
• Scaffold ID: Ga0208763_1001725
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3835
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029777	Metagenome / Metatranscriptome	187	Y
F057435	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208763_100172510	F057435	AGGAGG	MQKNIERQILLFTEATGLTKKAEVVHGTLFVKFNNPQDKWFFRRALRNFCRIFINRDTGINANDVGDEYAYDIVPEKDEKNWNRTEPLASQVDTQLTMMEDK
Ga0208763_100172513	F029777	N/A	RGVVELLKGPRYYEQAKVYCMIDMDYPEDESIYDLVKRPKKDRNPYCVSGDEGDIVYHVTLHVQECNATDLAIYDNKDRGDFFDLSGNNLESPMADLERIVNGN