Scaffold Ga0208763_1000135

Overview

Basic Information

• Taxon OID: 3300026136
• Scaffold ID: Ga0208763_1000135
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16399
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002190	Metagenome / Metatranscriptome	585	Y
F008783	Metagenome / Metatranscriptome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208763_100013520	F002190	AGAAGG	MNQRLKLPLTSMSNKLCYYKCFVTKKNKTEEYGYGLPWKDVIAEVEQHYKDGADAVELEMITEEEFNDRLPKPY
Ga0208763_10001355	F008783	AGGA	MATVEPKSMAVSLATPPGQMFTVDIAQSAFIDTETVNGGRCSPCSAKDFATKPTTLAQSLLVSRGLLRFKLMMNNLQVRSNVQLANIVTTYASDAGDSPITDLNFTLIFENADFVPTTGTTIDGSTTTSTKAQFIRDKIAEALNADHTERMNVFNPTSGAGNIRDIDVTVGQVMVQEGEIVEAITVAEVATFRPNTANQTPTDNSLTYSAE