NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208815_1001976

Scaffold Ga0208815_1001976


Overview

Basic Information
Taxon OID3300026134 Open in IMG/M
Scaffold IDGa0208815_1001976 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4044
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-9.4986Long. (o)-25.9999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055735Metagenome138Y
F090260Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0208815_10019764F090260N/AMEQKMKVSAKPNNEIMLGGAILWEVTWQRKDEDMFGQVIQLPPKGWSDPLLKQILPEDVVEALITKYELHEK
Ga0208815_10019765F055735N/AMKNKDLIKNYYDQLAELQRQYWFEYMETKEYCVRYDAIKKRIAELENE

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