NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209961_1020322

Scaffold Ga0209961_1020322


Overview

Basic Information
Taxon OID3300026130 Open in IMG/M
Scaffold IDGa0209961_1020322 Open in IMG/M
Source Dataset NameWater microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1499
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.496Long. (o)-122.1329Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010466Metagenome / Metatranscriptome303N
F040112Metagenome / Metatranscriptome162N
F063692Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209961_10203221F040112AGGMRKVDTCLIILVSFLLGSCVREPLLGEVLDIAEIQSEFEWVTLKSGKEEGFLEPLMKFEVYRTTEQSFKQIQDHLNRHLKRIEPGYYLNNEFNDFLRENGLRILNVNSSMISSNPFDDHYRVYFLSDSQTI
Ga0209961_10203222F063692GGAMKKLVAVVFVLIALVVMVLFSRAQDREQQLVNDRYKAACDFYFSGVVVDVANDFDVHRCILRLELDTSTIANFDVRDTTAYYHAVIDGTDAEVIESIIYDHSTSGQANFIRPGMRYTFDGEVDSAYLFLADTLVESWPIQISTFGLMDVARFHQIPMAGGKTAVQRNKGWWPRLR
Ga0209961_10203223F010466N/ARYLSALSRSDMRKLRFVVVFLLVQLNVFAQSAELEVGYDLAQEMLQWEEFNPTHKAESDRYLKSMNYAFGFNGPDIEEVNHLLSDVDGAIPTMIEDSYDGRRKTWRATSVFVSLALHSEGEKRMFYLDLANHIARTDSDQTYAAVLLLEYVESIGSGAVKKRRSMLLAYVQAYEEEIGIEFAKRIYVFLGEK

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