Scaffold Ga0209961_1020322

Overview

Basic Information

• Taxon OID: 3300026130
• Scaffold ID: Ga0209961_1020322
• Source Dataset Name: Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1499
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.496
  • Long. (^o): -122.1329
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010466	Metagenome / Metatranscriptome	303	N
F040112	Metagenome / Metatranscriptome	162	N
F063692	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209961_10203221	F040112	AGG	MRKVDTCLIILVSFLLGSCVREPLLGEVLDIAEIQSEFEWVTLKSGKEEGFLEPLMKFEVYRTTEQSFKQIQDHLNRHLKRIEPGYYLNNEFNDFLRENGLRILNVNSSMISSNPFDDHYRVYFLSDSQTI
Ga0209961_10203222	F063692	GGA	MKKLVAVVFVLIALVVMVLFSRAQDREQQLVNDRYKAACDFYFSGVVVDVANDFDVHRCILRLELDTSTIANFDVRDTTAYYHAVIDGTDAEVIESIIYDHSTSGQANFIRPGMRYTFDGEVDSAYLFLADTLVESWPIQISTFGLMDVARFHQIPMAGGKTAVQRNKGWWPRLR
Ga0209961_10203223	F010466	N/A	RYLSALSRSDMRKLRFVVVFLLVQLNVFAQSAELEVGYDLAQEMLQWEEFNPTHKAESDRYLKSMNYAFGFNGPDIEEVNHLLSDVDGAIPTMIEDSYDGRRKTWRATSVFVSLALHSEGEKRMFYLDLANHIARTDSDQTYAAVLLLEYVESIGSGAVKKRRSMLLAYVQAYEEEIGIEFAKRIYVFLGEK