Scaffold Ga0207683_10012984

Overview

Basic Information

• Taxon OID: 3300026121
• Scaffold ID: Ga0207683_10012984
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7112
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004876	Metagenome / Metatranscriptome	420	Y
F025112	Metagenome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207683_100129843	F004876	GGA	MVGVNRAPVSSSKEKKDADSGERGAQRQKRSKDKLIRLDDLIPDEKVVGGRQLFGATDTTQNQKHN
Ga0207683_100129847	F025112	N/A	STYQTAAAEEKDLFLVDLILSGSLDQMAERLSYRIAAHADENGAEEGAKEERARLLTARKITDLAAWLGQFGRDEEWLNEMLAAEASYQRRVAHILTEQALQKELGPLRLNLTRFELETVEVDSRDAAAEVVACVRNDGMEMSEIAEESRYPFHSSEVLLEDVPSEQQQKFLSVKAGTLFDPIPRGDSFEVWRVKTRTEPSLQDVTIRARLEKRIIDRCFNELLSKYIDWKFFLPPNE