NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207675_100567667

Scaffold Ga0207675_100567667


Overview

Basic Information
Taxon OID3300026118 Open in IMG/M
Scaffold IDGa0207675_100567667 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1135
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020438Metagenome224Y
F082513Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0207675_1005676671F020438GGAGMRAQTPLCESRAGERGAALITAILLSLLLLAAGGVLILTSTMTGVTARDSTAEMQAYYAAEAGVAKTLEVLRGNVQSNPAGTKATFRNVVCSPSFWTTTAGGYVNVAADGSSRFQITSILDPDNQNSAAMCALIPADKYKPERLRIRITGLGPRDSRKNMEVVVNRYTLEYDVKATVTLPNGSGTPINFNLGGSNVTSTSGVDASGGGSIDAFAINQADYNRTNNVIDGCNADGSNCSGS
Ga0207675_1005676672F082513N/ANRYDYDPSVTDASRANIQDSGEDITYFLNSADNTMYLARHDQYGTGSTVLANRIDGMSIHYFDQKVTYVAPPGGSDISGASAAEVSPSSAKYIVIAVSVTLDAVGQPGSTGYQPPYSVLLCSDVTLRNTDLWSY

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