Scaffold Ga0207675_100289250

Overview

Basic Information

• Taxon OID: 3300026118
• Scaffold ID: Ga0207675_100289250
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1594
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004499	Metagenome / Metatranscriptome	435	Y
F006187	Metagenome / Metatranscriptome	379	Y
F088441	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207675_1002892501	F088441	N/A	GVARVAMPEGTDSLDVLKRGFETPSRVLDVCEDVTVKVEVVVVPAEHPDAYWLFDPAKRI
Ga0207675_1002892502	F004499	GGAG	MRTNKTVTATVIVALLLIAVIARAAGDEKTITGVITKVDPATRIATVTPASGPAIFVQFAFDAGGPCDSCLGSGRRGPIFAETVTVGSTWTLTYTSSIPEGAATWFPGGTVNTVYRAVPAKAK
Ga0207675_1002892503	F006187	GGA	MSRVSGATIVFVILIAAGAFPAAARAECSLENVASAEEIAAGWTIHEDHRIVKQVDSAPYEQGVGNWFINRETTTQPMCSVFDDLGGYSLRSYMLQPIVAKTKVQICRATADGGSVRFVALDAKPRPPDTAHEVYESFDRPYTGSCPPPRPVSGTNPKSK