Scaffold Ga0207675_100034384

Overview

Basic Information

• Taxon OID: 3300026118
• Scaffold ID: Ga0207675_100034384
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4725
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075019	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207675_1000343845	F075019	N/A	VIRRPLVRLAAWLLITLVAALLIVFLLNLSRFDEPLLPELEALRKSKSAPLDDNAYPFALGFLAAKHRDPRAAGVEIIGILQARRDRGEPATIGKEEKQAILGSPLANDGLGIGSSATERRPSALTSSFGLVCLPRVNLDCAHRLIAAAASLDPNEPKLALLFARYETLLKQAHYVETPAPDPMTPWPPLGPIAELGRVRLAISFRSDPTAVFLEKASQELAFWRMALREAQLLGTKMSALAAIRWANDFLSTLMRERQLDASDLTQLRGFIRPFTGQESDIGAAFLSESRTSLLGGMPSVAGDASWVVRLLLQKNATFNQEFRETIEPMRVRSSLDAREYYGYKAYAPLPREFHWAPGMFYNFGGKLALSRSPWDAHQFPSRVHDEDGRITLLLLQAEIEERPDLDVATLVRSSAHRNPYTGEPMEYDSRAQTLGFACLETASHPPEPGEQCKVALGQKAP