Scaffold Ga0207675_100011051

Overview

Basic Information

• Taxon OID: 3300026118
• Scaffold ID: Ga0207675_100011051
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8456
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015747	Metagenome	252	Y
F036726	Metagenome	169	N
F104385	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207675_10001105110	F015747	N/A	MDNNSQVTGLRALVANVMLERARELSDLQACEVWRLIQLIDTGASPKSVRPATLQLALDFNRFPHARRVIEEKALGHERATGTGGNCDRSFSTN
Ga0207675_10001105112	F036726	GGA	MELDANVANELVELIKTKNGLQDSHVATFELHWRQSTFNDALDKAVKLSRAQAHEVWRALQLLVSRESLVGRPAAVVELAMQFNPFPVTWRVIADKALEYEHLAVKQKS
Ga0207675_1000110518	F104385	GAG	MRVDINIAGAATTNRGMLAFGHAISTAFHVTALYFGAAYLLITIPVHLIYTAVALAKQDRAPRVRIHVADVAPDGLLP