Scaffold Ga0208317_1009152

Overview

Basic Information

• Taxon OID: 3300026117
• Scaffold ID: Ga0208317_1009152
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 586
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 1.4995
  • Long. (^o): -36.9978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013189	Metagenome / Metatranscriptome	273	Y
F078828	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208317_10091521	F013189	AGGA	MEIERADKLTGNDHTRARNVAEHLDKKYPGWLWAVHVMDGLVTVKSMLLSGNWGFVLHEDKIDNDYRAVTLAGGEILERYKQKTNGFNQERYMD
Ga0208317_10091522	F078828	AGG	MTKKDTQYNWSELAYKADPELSAPVKQYVFDNGNKIFYKPKKRIKYGNRKSG