Scaffold Ga0209953_1000038

Overview

Basic Information

• Taxon OID: 3300026097
• Scaffold ID: Ga0209953_1000038
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56928
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (60.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002188	Metagenome / Metatranscriptome	585	Y
F003777	Metagenome / Metatranscriptome	469	Y
F005130	Metagenome / Metatranscriptome	411	Y
F055744	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_100003814	F005130	N/A	MAFSIQDYLANNKISTGTITQEVGDTPFKGGHNDIRKTNYEVKITEDGKLDLYTHKTVTTTK
Ga0209953_100003830	F002188	GGA	MIKDLQKLLKQVHEPDEYQLTPHNMSHPLYWIWKIENGKMKDLDVKLRPFRNEHARFDIFINGQYILEKDYIFEQSGKDFHIKFIKANFVGAYDLQLTDDIKLEGDIDLV
Ga0209953_100003831	F003777	GGAG	MSKVKPSIITPFNDKQRFKNLVNEVIEDSWIYTLVPESISLNQTLFTLNLINKKFVFEDIKVDNLSDYIDVYLMGVKKTSDMYVVTEVGNNIVITFTQSITLRPRDIVKTDFMVKGKIVS
Ga0209953_100003845	F055744	N/A	MVNYGNGFTWSEVYTMPIHWRKFYFKKLLDAKKKEKDEYDKQNRSSSSKGPGVRVRK