Scaffold Ga0209937_1005254

Overview

Basic Information

• Taxon OID: 3300026094
• Scaffold ID: Ga0209937_1005254
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3412
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4968
  • Long. (^o): -122.1333
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073153	Metagenome	120	N
F075754	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209937_100525410	F075754	GGAG	MISYQAGIRWHTPVNPWEPIHARVDDTSEWYAAQVGRSEYLRDTEEDAEMHHRKGGVVAEGLVKAIFAGMEWWDTHSFDTFLGGTRYDIISRGLNRGEPRQHYVHKIQAKKEERAKPSTHYYAVVRNHPDYWLIGHINSVRFWYLCDRSAPEFWDDEQFDGGFLSYEHFEQLPVAEAISPPPGIEVFGQG
Ga0209937_10052545	F073153	N/A	MSEQDLPVRDEIRRIDGNIEGILTRLGNQSETIARIDLLVEEMQEMQTELEHIEVRLNTLESRID