NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208881_1017879

Scaffold Ga0208881_1017879


Overview

Basic Information
Taxon OID3300026084 Open in IMG/M
Scaffold IDGa0208881_1017879 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_AAIW_ad_876m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1785
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000659Metagenome / Metatranscriptome952Y
F005610Metagenome / Metatranscriptome395Y
F061278Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0208881_10178791F061278N/AMKTFKQYLKEGVAWELSASKMIFDFQNVPDMKIPFTSKTMEWIFKVQLPRATVFHVTSGIGLEKLKKLQNKKKS
Ga0208881_10178792F000659N/AMKTFKQYLKEVNSKYIVSKNPSDKKWYAMGHVGSNKWMPVSSGFKNKAQAQKWAKSQDKVDIAARGEISGA
Ga0208881_10178793F005610AGGAVRSFKEYLTEADSEEVRDAKKVFTALQGMYPKIPKFPLVFKNLKGRGSGYLETSKLKGGKVIFVDKMVIDDSGMSSFEPDYAVVHEFAHAILAVTKGDLGHNKKHADLTYKLAQKFGLA
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