NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208750_1017397

Scaffold Ga0208750_1017397


Overview

Basic Information
Taxon OID3300026082 Open in IMG/M
Scaffold IDGa0208750_1017397 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1748
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018265Metagenome / Metatranscriptome236Y
F030785Metagenome / Metatranscriptome184Y
F033080Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0208750_10173972F033080AGAAGGMIDVDKIAEKVANEPLEDELKNWIIGETEDGHMPLVRKPQHVIDEAKVDEAIMRRHDLRQMEMYDDPYMNWSGLR
Ga0208750_10173973F030785AGGMKKATIEILEEGEKIFGSRTSGEYMVRRFEDGIEMGGEFHYTLTEAGAAVRKWENQTEK
Ga0208750_10173974F018265GAGMSMERHTLRAVKLTQNIFELNRVNKELVVVRKIIEDLKQRKMELMSS

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