Scaffold Ga0207702_10002660

Overview

Basic Information

• Taxon OID: 3300026078
• Scaffold ID: Ga0207702_10002660
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16780
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012295	Metagenome / Metatranscriptome	282	Y
F041393	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207702_1000266021	F012295	AGTAGG	MSVSNVQSALSTTDWHLDLAYDAPSRLSVACPSMADPGIDDPVNDTGLGPRRGDLQLSDELACFVRMLCEGSGEFS
Ga0207702_100026606	F041393	N/A	MKDGPGSATDKSGGYKMPRGITAVGVFLFFGATMASIAGTTLTWPGTFLDRLWVLNPTAYKQLANFSKSAGILFLLLAAVLATAGTGWFKHRLWGWRLAVAVMAAQVLGDLVNFFKGDYLRGGVGFSIATGLLFYLLRPIVRAVFNRAILA