NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208749_1025735

Scaffold Ga0208749_1025735


Overview

Basic Information
Taxon OID3300026077 Open in IMG/M
Scaffold IDGa0208749_1025735 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1242
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034143Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0208749_10257352F034143N/AMHSVDLNYDPWQYLTVDNFLPPDRWKEFQRLAHSEMEAYHEREGLTPSGKWIRWIDEDILPESNVLHKKMERFREPPKNVKKIMHWAVCPPNYTMPMHCDYDARFFTAVYYINPPKSYGTILCKNDSDYNDFELRNTDFNTNEYEIEVPWKQNKIFCFNNLPKSWHYYKAGTEPRIIIQSFFVDLDKIVEGKEDWDHLIDIDSKYYT
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