Scaffold Ga0208261_1112975

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208261_1112975

Scaffold Ga0208261_1112975

Overview

Basic Information
Taxon OID	3300026076 Open in IMG/M
Scaffold ID	Ga0208261_1112975 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	701
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-0.4612	Long. (^o)	-23.033259	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032682	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208261_11129752	F032682	AGAAGG	MNIVFYSYKKSIHAHINDHELKRLDHSIRSLRDFNNEIPVYLFCDDPAFIPPYFRLNYNVNVLPFVDGFDHNMLSAWSIHRWYNLKYFEDQSSNILYLDSDTIFYDDVQYI

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