Scaffold Ga0207708_10000005

Overview

Basic Information

• Taxon OID: 3300026075
• Scaffold ID: Ga0207708_10000005
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 284735
• Total Scaffold Genes: 264
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 165 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013424	Metagenome / Metatranscriptome	271	Y
F041799	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207708_10000005167	F041799	N/A	MVDESVTVKGSPVRSLQKFIDSELDAAQRDAVFAELPPEYATRFRSPILATETIPVHMLNRFTEAAAKAKGEPLEEFARRAGREGAGDAVRGIYRFFALVMTPPALLSKAGQMWSSLYNRGQLVVADQTNNSARISLVNFPTEVAGCARFTGWIEKMAELTGAKNVRVQKTQCFAKGGACCEWQLHWH
Ga0207708_1000000588	F013424	GGAGG	MATGTGKAPKQITWLICLILYIVALLAHFALVRITGGIGDWAWIIGFGLLLAAVQVRGL