Scaffold Ga0208747_1024309

Overview

Basic Information

• Taxon OID: 3300026074
• Scaffold ID: Ga0208747_1024309
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1456
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -0.015038
  • Long. (^o): -22.962334

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014792	Metagenome	260	Y
F101872	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208747_10243091	F101872	AGGA	MDTLKQIIQDIKVSNSLQGQANIGSRCNNFGLSEEDIRILMSASKPIKEPCDCHDELRFDQNVFKKPSIHETLG
Ga0208747_10243094	F014792	GGA	VNNERENYSWGIIQDMIEREISSAFKLREPTKMPSKKEIKQIIKSTVQKERK