Scaffold Ga0207961_1032590

Overview

Basic Information

• Taxon OID: 3300026073
• Scaffold ID: Ga0207961_1032590
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_250_ad_252m_LV_B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1176
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -0.015038
  • Long. (^o): -22.962334

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013815	Metagenome / Metatranscriptome	268	Y
F060128	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207961_10325903	F013815	GGAG	MYYVQYEKTLPPWYSGIDKIQAETSEDAVKEFYKHHDSFEERVRSVSEVQNTYQKQIM
Ga0207961_10325904	F060128	AGG	MADDFDFGFSAVSTDEFKKTQTDTETAPSTGVSSDEFDELSKKIDSISSLIHSLGDREDTSLFDETGETVKANAEKIARVEDKIDKI