Scaffold Ga0208541_1004687

Overview

Basic Information

• Taxon OID: 3300026061
• Scaffold ID: Ga0208541_1004687
• Source Dataset Name: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1187
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Fairfield, San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.224476
  • Long. (^o): -122.019341
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081923	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208541_10046872	F081923	GAGG	MYRRSSIFLLIIAAALAAACTMANIGSVRTSPEVTRQFESLQIHPNYRYWYLNQENNPFGVIGLDREYEFDGGPVWRAVEPDSPTFKKVVGLVASFPMPSSMTTGYTIFEHQGRPIGVWYSSIGLGVTIDPATKTVSPATTTPWKSPF