NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208294_1001629

Scaffold Ga0208294_1001629


Overview

Basic Information
Taxon OID3300026057 Open in IMG/M
Scaffold IDGa0208294_1001629 Open in IMG/M
Source Dataset NameNatural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2135
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: Twitchell Island, San Francisco Bay, California
CoordinatesLat. (o)38.107536Long. (o)-121.649704Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034408Metagenome / Metatranscriptome175Y
F091541Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208294_10016291F034408AGGAGMAPHDESIRNLALYMPKLAYGMVVGVPRVPFVVDIPIQFSSSTVNAPPVVQNLDNNLTQDTIIERVSYNLFQQNTFPGSPFQSLYFNMLKQSGATGVGVQLQVFGGPKYVVSNQFVDLGNLADVLAVAWPNGWPLPKQSNVKVSAILTQTPVSVPFNVTLTLLGWQLLDKTIDDLSDQEARARLRKLG
Ga0208294_10016292F091541AGGAGMSRSIVGKPSRKFAQDQEKTKRVAFGLGASPDAPGALGAAEKCLKCSFGNIPVIEEVVWTIPLPLTADEAQSTLGDTVNLLSGSSSVPGVASIDSTFLINGILQTDILAQGIGVHVFCEPMSFSTIGNAFLAPSTTVAPPPSPDVFTTNDLTQRAMGTTVDADGANFTPAVLEFGVDVWRAGWNFINAYQFQWKTSQRELVLNELAADVSYFGSFADAEASGTSEVAIIEFVAAINAQYRAKGSTTIFLPVNFRRVGSVTASSPTTANTGVFHPTRDFDLAPVTWGGLRWQGYGCRGQMYRPIESPCFLERGIPIGMLFVVQDAVHQAQMLQAVTLNNEPLGINVSPDENLSDTTSGVGASTMLEQTLDTTPTLSPQTVNVSRQIFKGGILKLAIKIKGWEMPGGWKAYCETNMPQIMSASKSG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.