Scaffold Ga0207639_10454574

Overview

Basic Information

• Taxon OID: 3300026041
• Scaffold ID: Ga0207639_10454574
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1163
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026031	Metagenome	199	N
F030448	Metagenome	185	N
F038700	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207639_104545741	F026031	N/A	KAFQVAVGNRGQTLRIEMQFEDETREQIYLGPELAPRLVQSLIQGAATAEKMRKAGLGSIVSTSTPWRAKDVRTGAIVGTDLFAIGFTTEEGPPVEIAMPRDVAEKTIRFILDDLKGGRPAKQD
Ga0207639_104545742	F030448	AGGGGG	MQSARVGEDHPVAQLVHVEWVVREINELIDRQRKLIEKLQESRSDLTSAKIVLDSLIVTLTLHLQERDQLLSMFNAEMAEVFAACRNASAKARSDWRQQAA
Ga0207639_104545743	F038700	N/A	RIVVVADTHRPARLPPRAQRNPEVPRKIASSSATCATQPADISQAEKVPLSPQATQTGMAGERSAPVEAVVADPEGSAENATAMHVLELYDRLGGFMRPPKSS