Scaffold Ga0207639_10099596

Overview

Basic Information

• Taxon OID: 3300026041
• Scaffold ID: Ga0207639_10099596
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2345
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006285	Metagenome / Metatranscriptome	377	Y
F042399	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207639_100995961	F042399	N/A	MRTVSADRASIDYWQDYGAGRQVLKSHFGIRVWQDHCCAITNVAAENPTMFGEPHAIPVDLSTGAGQHSLSNVVSEHMNHHPESDLMAV
Ga0207639_100995962	F006285	N/A	MAKVHEYILVAVDGTCGITKSNGPICFQQSRQEVGGHFEVYDPQLGDGYTAQVNEDGRRFKANALFDDVAGNVLIGRSHGSEMWGLSEDQRTEVLTLLKTKR