Scaffold Ga0207703_10000020

Overview

Basic Information

• Taxon OID: 3300026035
• Scaffold ID: Ga0207703_10000020
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 251603
• Total Scaffold Genes: 267
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 194 (72.66%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064701	Metagenome / Metatranscriptome	128	Y
F084381	Metagenome / Metatranscriptome	112	Y
F090229	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207703_10000020120	F064701	AGGTGG	MSAVEGRSARAAPAPLPLARGLGDSVQMPFGRVPSGPGPMLYYSMKHRTQLYLDEGQYRWLKQRAGEAGSIAAVVRDLIDAERARGVDAATDPLLSYLVDEAPGKGRKRTSVSSLDRDLYGS
Ga0207703_10000020156	F084381	AGAAG	MAVLIPLAHVGHWLWVLYLPPVLIVAGSLARSTLAERRKKREEA
Ga0207703_10000020265	F090229	N/A	MPLEGHYERQTTPLYKLNSREIKIASITFLVTIAAMVAVVIATVGDSNPPTPLGCIHAQTAGIVGAETISGCGAEAVAKCSHAARFDSPQASTVVTECEKQGVRF