Scaffold Ga0207658_10486248

Overview

Basic Information

• Taxon OID: 3300025986
• Scaffold ID: Ga0207658_10486248
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1098
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019661	Metagenome / Metatranscriptome	228	Y
F021005	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207658_104862481	F019661	AGGAGG	MSNRQGQKLGPRRGNLNRFPYEPRVIGGKLFMPAELQVIHRYVVETPVLEALTDEIRAVVETVWLELISKLPPKT
Ga0207658_104862483	F021005	GAGG	MPLSPEQKALCERVEKGEPEPGAGALIRQQAQEIDALWDRLSRAYALVRRESPAEMIQEEMEALRAMLDERRRSQLKKS