Scaffold Ga0210117_1001172

Overview

Basic Information

• Taxon OID: 3300025985
• Scaffold ID: Ga0210117_1001172
• Source Dataset Name: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2637
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0431 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.000637
  • Long. (^o): -121.624207

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012999	Metagenome / Metatranscriptome	275	Y
F100569	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210117_10011722	F012999	N/A	MDYDLAENLMNAGFPQIGKGSLIGPMNKLVWRSGDRVYVPTLEELIEACGENFRSLDKQHGGWLASANFDQSCFAKTPAEAVARLWLALRK
Ga0210117_10011726	F100569	GAG	MIDGVIRKFATDVDEPVLAEPRKGFFVRFMEALRETRRRQAHHEVAKHAHLLSNDFWR