NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210106_1030301

Scaffold Ga0210106_1030301


Overview

Basic Information
Taxon OID3300025983 Open in IMG/M
Scaffold IDGa0210106_1030301 Open in IMG/M
Source Dataset NameWetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordC_D2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.15012Long. (o)-122.438774Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014614Metagenome / Metatranscriptome261Y
F027171Metagenome / Metatranscriptome195N

Sequences

Protein IDFamilyRBSSequence
Ga0210106_10303012F014614N/AMTDWYADYYRQSRGYNWNDLRELSYQKPKVELTVPDVFKHRFATRAEYDAWVEERRKLYF
Ga0210106_10303014F027171N/AIDSLEFDPDGLIRVTAVVDQVVLTHHATQWDPEEYGSALCRGSFYLSDEDLIPATDAELCKLIAERVDDWAPVDPDE

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