Scaffold Ga0210092_1014624

Overview

Basic Information

• Taxon OID: 3300025978
• Scaffold ID: Ga0210092_1014624
• Source Dataset Name: Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1040
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.107521
  • Long. (^o): -121.649681

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034230	Metagenome / Metatranscriptome	175	Y
F045836	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210092_10146241	F034230	N/A	GPENDKLKVKVGPFFIQESEKKINLEGTASHVVRKGKRINVTVTVENYGKEKSEPVRLKYVETGKKAGEPRFYRIQAIEPGKKWERTFMARFDESGRKSVTATLLTLENQPLADEKGKSRPDTSHTGSVNLTVKEM
Ga0210092_10146243	F045836	AGGAG	MDNPNLFTALAYYTVSGFLDPIQWLICGICGWSVERLDQAMIAGAAMVGVLYIAMAAFYPDGKLFSFPTPHVGIAILGKAVGAVLMTGLIHWLKQRQMHRKQGS