Scaffold Ga0207668_10022925

Overview

Basic Information

• Taxon OID: 3300025972
• Scaffold ID: Ga0207668_10022925
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4004
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021173	Metagenome / Metatranscriptome	220	N
F057183	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207668_100229254	F021173	AGGAGG	MATPVIISLLVGLVAGGACMAMWAANRIEEESVRQFDRGFERGRWLTDISVAKAMEDQDRARRVGLLVAGARQPSGSPTTRPPGQEPRPSLLVLP
Ga0207668_100229256	F057183	N/A	MKSAAPDFSARTARLASVLRDRGVRRLLRRQGLASPPFGSAFVWLAEGEGAAGSWFARVTGLPGRGSLVRFGHPGAPAFQLAAADPEAAPALPASLEPALRELCEGLGWSVVRLVEDALPALDPVRRRVPGADDEGAFLAWVYTLAVDEALDRLSARGLLTHPATGVTSVRVADPALAGAAL